Influence of soil properties on the vertical movement of genetically-marked Pseudomonas fluorescens through large soil microcosms

Summary Vertical translocation of the introduced transposon Tn5-tagged Pseudomonas fluorescens cells was studies after irrigation of 50-cm long soil columns of loamy sand. The soil in the columns was slowly brought to saturation using groundwater, and enough water was then slowly added to permit collection of the percolated water. Introduced bacteria were transported to lower soil layers to a significantly higher degree in undisturbed soil cores than in repacked cores; water transport was hampered in both core types due to high soil bulk densities. Soil bulk density affected the degree of transport of the introduced cells; progressively more cells were translocated to deeper soil layers and into the percolation water at decreasing soil bulk densities. Repeated percolation of soil at a bulk density of 1.25 caused an increase in Tn5-tagged cell numbers in the lower soil layers and in the percolated water. Further, cells initially introduced into a dry (5.3% moisture) soil were translocated to a lesser extent than cells introduced into a wetter (13% moisture) soil. Finally, wheat roots enhanced the water-induced transport of introduced cells to the 40- and 50-cm deep soil layers and into the effluent, but not to the remaining soil layers. Large soil columns such as those used in the present study are useful in assessing the transport and survival of introduced bacterial cells in soils under a variety of simulated environmental conditions.     

Gram-negative identification card for identification of Salmonella, Escherichia coli, and other Enterobacteriaceae isolated from foods: collaborative study

Twelve laboratories evaluated the Gram-Negative Identification (GNI) Card to identify members of the Enterobacteriaceae. Eighty-four isolates, previously isolated from foods, were used in the collaborative study; the isolates represented 12 genera within the Enterobacteriaceae group. Each collaborator streaked each isolate on tryptic soy agar plates for purity. In the method, plates are incubated 18-24 h at 35 degrees C. Isolated colonies are then subcultured to tryptic soy agar slants and incubated 18-24 h at 35 degrees C. An emulsion is made from the growth on the slant in 1.8 mL 0.45% sodium chloride solution. The GNI Card is filled and placed in a reader/incubator. Isolates are identified and an identification is printed. The Vitek System correctly identified 96.7% of Salmonella sp., 97.0% of Escherichia coli, and an average of 93.8% of the other enteric genera. The method using the Vitek System and GNI Card has been approved interim official first action by AOAC as a screening method for the presumptive identification of Salmonella sp., E. coli, and other Enterobacteriaceae isolated from foods.     

Roughness of soil fracture surfaces as a measure of soil microstructure

The examination of soil fracture surfaces that are created under tensile stress may reveal a great deal about the internal structural condition of the soil. A simple technique for quantifying the roughness of soil fracture surfaces from a measurement of their topography in cross-section is described. The technique involves calculating the standard deviation of the differences between the measured elevations of soil fracture surfaces and their corresponding running-mean values. The standard deviation, σ_R, is used as a measure of the fracture surface roughness. Advantages of this technique over others are discussed. Two methods for measuring the topography of soil fracture surfaces are presented: a bisection (single transect) method, and a laser scanning (multiple transects) method. The laser scanning method is to be preferred because it requires no sample preparation and enables greater and more rapid replication. Also, fracture surfaces created by applying direct tension in the hands produced values of σ_R that were statistically indistinguishable from those created using indirect tension in a loading frame. This result makes the technique of fracture surface analysis usable for both laboratory as well as field investigations of soil structure. An example of the technique is presented to illustrate the role that air-filled pores play in the brittle fracture of unsaturated soil (air-filled pores are closer together in drier soils and further apart in wetter soils.) A strong positive linear correlation was found between the gravimetric water content, w and σ_R of natural soil clods, which supports the contention that brittle fracture of unsaturated soils under tensile stress occurs at least partly because of the propagation of air-filled pores.     

Kepone effects on larval development of mud-crab and blue-crab

Laboratory experiments wer conducted to determine the effects of Kepone on the larval development of the mud-crab,Rhithropanopeus harrisii, and the commercial blue crab,Callinectes sapidus, from the time of hatching until the 1st crab stage was reached. Differential survival ofR. harrisii from hatching to 1st crab stage occurred in a range of 35 to 125 ppb Kepone, whereas differential survival ofC. sapidus over the same period of development occurred in a range of 0.1 to 1.0 ppb. Statistical analysis indicated that, for every 10 ppb Kepone added, duration from hatching to 1st crab stage ofR. harrisii was increased by 0.391±0.043 days; whereas for each increase of 0.1 ppb, the duration from hatching to 1st crab stage ofC. sapidus is prolonged by 0.38±0.10 days. The 1st and 2nd zoeal stages ofR. harrisii were the most sensitive developmental stages to Kepone, but the 1st zoeal stage ofC. sapidus was not sensitive, statistically, to any concentration of Kepone tested. In zoeal stages II, III and IV, there were significant increases in mortality ofC. sapidus over the previous stage in all media tested.     

Automated sample cleanup for pesticide multiresidue determination. I. Evaluation of solvent partitioning module

An automated continuous flow procedure is described that improves the cost effectiveness and precision of AOAC methodology for multiresidue pesticide determinations in nonfatty foods. Individual modules capable of performing automated solvent partitioning and automated column chromatography were constructed and integrated into a continuous flow system. Data are presented comparing the recoveries and precision for the determination of 8 pesticides (aldrin, dieldrin, p,p'-DDT, ethion, heptachlor epoxide, lindane, parathion, and ronnel) partitioned from 2 food crops (spinach and tomatoes) by both the manual and automated procedures.     

Tillage and the environment in sub-tropical Australia—Tradeoffs and challenges

Tillage is defined here in a broad sense, including disturbance of the soil and crop residues, wheel traffic and sowing opportunities. In sub-tropical, semi-arid cropping areas in Australia, tillage systems have evolved from intensively tilled bare fallow systems, with high soil losses, to reduced and no tillage systems. In recent years, the use of controlled traffic has also increased. These conservation tillage systems are successful in reducing water erosion of soil and sediment-bound chemicals. Control of runoff of dissolved nutrients and weakly sorbed chemicals is less certain. Adoption of new practices appears to have been related to practical and economic considerations, and proved to be more profitable after a considerable period of research and development. However there are still challenges. One challenge is to ensure that systems that reduce soil erosion, which may involve greater use of chemicals, do not degrade water quality in streams. Another challenge is to ensure that systems that improve water entry do not increase drainage below the crop root zone, which would increase the risk of salinity. Better understanding of how tillage practices influence soil hydrology, runoff and erosion processes should lead to better tillage systems and enable better management of risks to water quality and soil health. Finally, the need to determine the effectiveness of in-field management practices in achieving stream water quality targets in large, multi-land use catchments will challenge our current knowledge base and the tools available.     

Database derived microsatellite markers (SSRs) for cultivar differentiation in <Emphasis Type="Italic">Brassica oleracea</Emphasis>

Fifty-nine Brassica oleracea cultivars, belonging to five botanical varieties, were evaluated for microsatellite (SSR) polymorphisms using 11 database sequence derived primer pairs. The cultivars represented 12 broccoli (Brassica oleracea var. italica), ten Brussels sprouts (B. o. var. gemmifera), 21 cabbage (B. o. var. capitata, including the groups white and red cabbage), six savoy cabbage (B. o. var. sabauda), and ten cauliflower (B. o. var. botrytis) cultivars from 13 seed suppliers. The 11 primer pairs amplified in total 47 fragments, and differentiated 51 of the cultivars, whereas the remaining eight cultivars were differentiated from the rest in four inseparable pairs. All SSR markers, except one, produced a polymorphic information content (PIC value) of 0.5 or above. The average diversity for all markers within the tested material was 0.64. There was no major difference in the diversity within botanical varieties and groups. The cluster analysis and the resulting dendrogram showed that the cultivars tended to group within these taxonomic units. The present study substantiates the use of microsatellite markers as a powerful tool for cultivar differentiation and identification in vegetable brassicas.     

Polycyclic aromatic hydrocarbons in background podzolic and gleyic peat-podzolic soils

The qualitative and quantitative composition of polycyclic aromatic hydrocarbons (PAHs) has been determined in the background podzolic and gleyic peat-podzolic soils of the middle and northern taiga zones of northeastern Europe using the methods of highly efficient liquid chromatography and chromato-mass spectrometry. The distribution of polyarenes in the soil profiles follows the eluvial-illuvial pattern. Organic and illuvial horizons are the biogeochemical barriers for PAHs migrating in the soils. The revealed regularities of the accumulation and redistribution of PAHs in the soil profiles are in agreement with the character of the soil-forming processes in the northern and middle taiga zones.     

Conventional analyses of data from dietary validation studies may misestimate reporting accuracy: illustration from a study of the effect of interview modality on children's reporting accuracy

OBJECTIVE: To compare two approaches to analysing energy- and nutrient-converted data from dietary validation (and relative validation) studies - conventional analyses, in which the accuracy of reported items is not ascertained, and reporting-error-sensitive analyses, in which reported items are classified as matches (items actually eaten) or intrusions (items not actually eaten), and reported amounts are classified as corresponding or overreported. DESIGN: Subjects were observed eating school breakfast and lunch, and interviewed that evening about that day's intake. For conventional analyses, reference and reported information were converted to energy and macronutrients; then t-tests, correlation coefficients and report rates (reported/reference) were calculated. For reporting error-sensitive analyses, reported items were classified as matches or intrusions, reported amounts were classified as corresponding or overreported, and correspondence rates (corresponding amount/reference amount) and inflation ratios (overreported amount/reference amount) were calculated. SUBJECTS: Sixty-nine fourth-grade children (35 girls) from 10 elementary schools in Georgia (USA). RESULTS: For energy and each macronutrient, conventional analyses found that reported amounts were significantly less than reference amounts (every P < 0.021; paired t-tests); correlations between reported and reference amounts exceeded 0.52 (every P < 0.001); and median report rates ranged from 76% to 95%. Analyses sensitive to reporting errors found median correspondence rates between 67% and 79%, and that median inflation ratios, which ranged from 7% to 17%, differed significantly from 0 (every P < 0.0001; sign tests). CONCLUSIONS: Conventional analyses of energy and nutrient data from dietary reporting validation (and relative validation) studies may overestimate accuracy and mask the complexity of dietary reporting error.     

Underweight, overweight and obesity among South African adolescents: results of the 2002 National Youth Risk Behaviour Survey

OBJECTIVE: The present paper reports the prevalence of underweight, overweight and obesity by gender, ethnicity and grade, among participants in a 2002 national survey among South African school-going youth that included height and weight measurements. DESIGN: A stratified two-stage sample was used. Nationally representative rates of underweight, overweight and obesity were calculated using weighted survey data and compared using chi2 analysis. SETTING: In all, 9224 grade 8 to grade 11 students, present at school in selected classes within selected South African government-funded schools in all nine provinces, participated in this study. Most of the students were between 13 and 19 years of age. RESULTS: Higher rates of underweight were observed for males than females as well as for black and 'coloured' than white students. Within each gender group, black and 'coloured' students had significantly higher rates of underweight than their white counterparts. Higher percentages of females than males were overweight and obese, overall and among black students. Furthermore, white male students had significantly higher rates of overweight than their black and 'coloured' counterparts. Among females, black and white students had significantly higher rates than 'coloured' students. Students in higher grades showed significantly lower rates of underweight and higher rates of overweight. DISCUSSION: These data confirm that South Africa, a developing nation in socio-economic transition, is experiencing both undernutrition and overnutrition. However, these problems are disproportionately distributed by gender, socio-economics and ethnicity. Continued surveillance of nutritional status may be one important component of a national strategy to prevent and control malnutrition.